J3_8FKP_005
3D structure
- PDB id
- 8FKP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.85 Å
Loop
- Sequence
- CUCG*CGAUAGUCAACAAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 8FKP|1|L1|C|23, 8FKP|1|L3|U|354, 8FKP|1|L3|A|362
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FKP_005 not in the Motif Atlas
- Geometric match to J3_8C3A_047
- Geometric discrepancy: 0.0853
- The information below is about J3_8C3A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
8FKP|1|L1|C|21
8FKP|1|L1|U|22
8FKP|1|L1|C|23
8FKP|1|L1|G|24
*
8FKP|1|L3|C|351
8FKP|1|L3|G|352
8FKP|1|L3|A|353
8FKP|1|L3|U|354
8FKP|1|L3|A|355
8FKP|1|L3|G|356
8FKP|1|L3|U|357
8FKP|1|L3|C|358
8FKP|1|L3|A|359
8FKP|1|L3|A|360
8FKP|1|L3|C|361
8FKP|1|L3|A|362
8FKP|1|L3|A|363
8FKP|1|L3|G|364
8FKP|1|L3|U|365
8FKP|1|L3|A|366
8FKP|1|L3|C|367
*
8FKP|1|L3|G|374
8FKP|1|L3|G|375
8FKP|1|L3|A|376
8FKP|1|L3|A|377
8FKP|1|L3|A|378
8FKP|1|L3|G|379
Current chains
- Chain L1
- 5.8S rRNA
- Chain L3
- 28S rRNA
Nearby chains
- Chain LI
- 60S ribosomal protein L26
- Chain LW
- 60S ribosomal protein L37
- Chain NS
- Ribosome production factor 1
- Chain SA
- 60S ribosomal protein L4
- Chain SZ
- Nucleolar protein 16
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