J3_8FKP_009

3D structure

PDB id

8FKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8FKP|1|L3|U|4882, 8FKP|1|L3|A|4938, 8FKP|1|L3|C|4940, 8FKP|1|L3|A|4943, 8FKP|1|L3|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKP|1|L3|G|4751
8FKP|1|L3|U|4752
8FKP|1|L3|U|4753
8FKP|1|L3|G|4754
*
8FKP|1|L3|C|4879
8FKP|1|L3|C|4880
8FKP|1|L3|U|4881
8FKP|1|L3|U|4882
8FKP|1|L3|C|4883
*
8FKP|1|L3|G|4936
8FKP|1|L3|C|4937
8FKP|1|L3|A|4938
8FKP|1|L3|C|4939
8FKP|1|L3|C|4940
8FKP|1|L3|G|4941
8FKP|1|L3|C|4942
8FKP|1|L3|A|4943
8FKP|1|L3|C|4944
8FKP|1|L3|G|4945
8FKP|1|L3|U|4946
8FKP|1|L3|U|4947
8FKP|1|L3|C|4948

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain L8

60S ribosomal protein L14

Chain LT

60S ribosomal protein L35a

Chain SC

60S ribosomal protein L6