J3_8FKQ_010

3D structure

PDB id

8FKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8FKQ|1|L3|U|4882, 8FKQ|1|L3|A|4938, 8FKQ|1|L3|C|4940, 8FKQ|1|L3|A|4943, 8FKQ|1|L3|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKQ|1|L3|G|4751
8FKQ|1|L3|U|4752
8FKQ|1|L3|U|4753
8FKQ|1|L3|G|4754
*
8FKQ|1|L3|C|4879
8FKQ|1|L3|C|4880
8FKQ|1|L3|U|4881
8FKQ|1|L3|U|4882
8FKQ|1|L3|C|4883
*
8FKQ|1|L3|G|4936
8FKQ|1|L3|C|4937
8FKQ|1|L3|A|4938
8FKQ|1|L3|C|4939
8FKQ|1|L3|C|4940
8FKQ|1|L3|G|4941
8FKQ|1|L3|C|4942
8FKQ|1|L3|A|4943
8FKQ|1|L3|C|4944
8FKQ|1|L3|G|4945
8FKQ|1|L3|U|4946
8FKQ|1|L3|U|4947
8FKQ|1|L3|C|4948

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain L8

60S ribosomal protein L14

Chain LT

60S ribosomal protein L35a

Chain SC

60S ribosomal protein L6