J3_8FKR_009

3D structure

PDB id

8FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

8FKR|1|L3|A|1805, 8FKR|1|L3|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FKR_009 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.43

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8FKR|1|L3|U|1726
8FKR|1|L3|U|1727
*
8FKR|1|L3|A|1802
8FKR|1|L3|G|1803
8FKR|1|L3|A|1804
8FKR|1|L3|A|1805
8FKR|1|L3|G|1806
*
8FKR|1|L3|C|1832
8FKR|1|L3|G|1833
8FKR|1|L3|U|1834
8FKR|1|L3|G|1835
8FKR|1|L3|G|1836
8FKR|1|L3|A|1837

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L21

Chain SD

60S ribosomal protein L7