J3_8FKS_010

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

8FKS|1|L3|A|1805, 8FKS|1|L3|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FKS_010 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.4395

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8FKS|1|L3|U|1726
8FKS|1|L3|U|1727
*
8FKS|1|L3|A|1802
8FKS|1|L3|G|1803
8FKS|1|L3|A|1804
8FKS|1|L3|A|1805
8FKS|1|L3|G|1806
*
8FKS|1|L3|C|1832
8FKS|1|L3|G|1833
8FKS|1|L3|U|1834
8FKS|1|L3|G|1835
8FKS|1|L3|G|1836
8FKS|1|L3|A|1837

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L21

Chain SD

60S ribosomal protein L7