J3_8FKV_007
3D structure
- PDB id
- 8FKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State D1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- CA*UUGAAAAG*CG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FKV_007 not in the Motif Atlas
- Geometric match to J3_4V9F_011
- Geometric discrepancy: 0.0873
- The information below is about J3_4V9F_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
8FKV|1|L1|C|19
8FKV|1|L1|A|20
*
8FKV|1|L3|U|380
8FKV|1|L3|U|381
8FKV|1|L3|G|382
8FKV|1|L3|A|383
8FKV|1|L3|A|384
8FKV|1|L3|A|385
8FKV|1|L3|A|386
8FKV|1|L3|G|387
*
8FKV|1|L3|C|414
8FKV|1|L3|G|415
Current chains
- Chain L1
- 5.8S rRNA
- Chain L3
- 28S rRNA
Nearby chains
- Chain LI
- 60S ribosomal protein L26
- Chain NS
- Ribosome production factor 1
- Chain SA
- 60S ribosomal protein L4
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