J3_8FKV_008
3D structure
- PDB id
- 8FKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State D1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- CA*UUGAAAAGAAC*GAGUUCAAGAGGGCG
- Length
- 28 nucleotides
- Bulged bases
- 8FKV|1|L3|G|409, 8FKV|1|L3|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FKV_008 not in the Motif Atlas
- Geometric match to J3_4WF9_011
- Geometric discrepancy: 0.1181
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8FKV|1|L1|C|19
8FKV|1|L1|A|20
*
8FKV|1|L3|U|380
8FKV|1|L3|U|381
8FKV|1|L3|G|382
8FKV|1|L3|A|383
8FKV|1|L3|A|384
8FKV|1|L3|A|385
8FKV|1|L3|A|386
8FKV|1|L3|G|387
8FKV|1|L3|A|388
8FKV|1|L3|A|389
8FKV|1|L3|C|390
*
8FKV|1|L3|G|401
8FKV|1|L3|A|402
8FKV|1|L3|G|403
8FKV|1|L3|U|404
8FKV|1|L3|U|405
8FKV|1|L3|C|406
8FKV|1|L3|A|407
8FKV|1|L3|A|408
8FKV|1|L3|G|409
8FKV|1|L3|A|410
8FKV|1|L3|G|411
8FKV|1|L3|G|412
8FKV|1|L3|G|413
8FKV|1|L3|C|414
8FKV|1|L3|G|415
Current chains
- Chain L1
- 5.8S rRNA
- Chain L3
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L17
- Chain LI
- 60S ribosomal protein L26
- Chain NM
- Protein MAK16 homolog
- Chain NS
- Ribosome production factor 1
- Chain SA
- 60S ribosomal protein L4
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