J3_8FKW_002

3D structure

PDB id

8FKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FKW_002 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2069

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8FKW|1|L3|G|1969
8FKW|1|L3|A|1970
8FKW|1|L3|C|1971
*
8FKW|1|L3|G|1995
8FKW|1|L3|C|1996
8FKW|1|L3|U|1997
8FKW|1|L3|A|1998
8FKW|1|L3|A|1999
8FKW|1|L3|G|2000
8FKW|1|L3|G|2001
*
8FKW|1|L3|C|2016
8FKW|1|L3|A|2017
8FKW|1|L3|C|2018

Current chains

Chain L3

28S rRNA

Nearby chains

Chain BA

60S ribosomal protein L12

Chain NF

Ribosome biogenesis protein NSA2 homolog

Chain SQ

mRNA turnover protein 4 homolog