J3_8FKX_013

3D structure

PDB id

8FKX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8FKX|1|L3|U|4882, 8FKX|1|L3|A|4938, 8FKX|1|L3|C|4940, 8FKX|1|L3|A|4943, 8FKX|1|L3|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKX|1|L3|G|4751
8FKX|1|L3|U|4752
8FKX|1|L3|U|4753
8FKX|1|L3|G|4754
*
8FKX|1|L3|C|4879
8FKX|1|L3|C|4880
8FKX|1|L3|U|4881
8FKX|1|L3|U|4882
8FKX|1|L3|C|4883
*
8FKX|1|L3|G|4936
8FKX|1|L3|C|4937
8FKX|1|L3|A|4938
8FKX|1|L3|C|4939
8FKX|1|L3|C|4940
8FKX|1|L3|G|4941
8FKX|1|L3|C|4942
8FKX|1|L3|A|4943
8FKX|1|L3|C|4944
8FKX|1|L3|G|4945
8FKX|1|L3|U|4946
8FKX|1|L3|U|4947
8FKX|1|L3|C|4948

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain L8

60S ribosomal protein L14

Chain LT

60S ribosomal protein L35a

Chain SC

60S ribosomal protein L6