J3_8FKY_003

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8FKY|1|L3|A|2396

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FKY_003 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1111

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8FKY|1|L3|C|2393
8FKY|1|L3|G|2394
8FKY|1|L3|A|2395
8FKY|1|L3|A|2396
8FKY|1|L3|G|2397
8FKY|1|L3|U|2398
8FKY|1|L3|G|2399
*
8FKY|1|L3|C|2805
8FKY|1|L3|A|2806
8FKY|1|L3|A|2807
*
8FKY|1|L3|U|2819
8FKY|1|L3|C|2820
8FKY|1|L3|U|2821
8FKY|1|L3|G|2822

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L19