J3_8FKY_008

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CA*UUGAAAAG*CG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FKY_008 not in the Motif Atlas

Geometric match to J3_5TBW_002

Geometric discrepancy: 0.0971

The information below is about J3_5TBW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

8FKY|1|L1|C|19
8FKY|1|L1|A|20
*
8FKY|1|L3|U|380
8FKY|1|L3|U|381
8FKY|1|L3|G|382
8FKY|1|L3|A|383
8FKY|1|L3|A|384
8FKY|1|L3|A|385
8FKY|1|L3|A|386
8FKY|1|L3|G|387
*
8FKY|1|L3|C|414
8FKY|1|L3|G|415

Current chains

Chain L1

5.8S rRNA

Chain L3

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L26

Chain SA

60S ribosomal protein L4