J3_8FKZ_002

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CAG*CGUAG*UCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FKZ_002 not in the Motif Atlas

Homologous match to J3_8C3A_004

Geometric discrepancy: 0.1553

The information below is about J3_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8FKZ|1|L3|C|1546
8FKZ|1|L3|A|1547
8FKZ|1|L3|G|1548
*
8FKZ|1|L3|C|1580
8FKZ|1|L3|G|1581
8FKZ|1|L3|U|1582
8FKZ|1|L3|A|1583
8FKZ|1|L3|G|1584
*
8FKZ|1|L3|U|1609
8FKZ|1|L3|C|1610
8FKZ|1|L3|C|1611
8FKZ|1|L3|G|1612

Current chains

Chain L3

28S rRNA

Nearby chains