J3_8FKZ_004

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8FKZ|1|L3|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FKZ_004 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1002

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8FKZ|1|L3|C|2393
8FKZ|1|L3|G|2394
8FKZ|1|L3|A|2395
8FKZ|1|L3|A|2396
8FKZ|1|L3|G|2397
8FKZ|1|L3|U|2398
8FKZ|1|L3|G|2399
*
8FKZ|1|L3|C|2805
8FKZ|1|L3|A|2806
8FKZ|1|L3|A|2807
*
8FKZ|1|L3|U|2819
8FKZ|1|L3|C|2820
8FKZ|1|L3|U|2821
8FKZ|1|L3|G|2822

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L19

Chain LR

60S ribosomal protein L34

Chain SR

GTP-binding protein 4