J3_8FL7_005

3D structure

PDB id

8FL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8FL7|1|L3|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FL7_005 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.09

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8FL7|1|L3|C|2393
8FL7|1|L3|G|2394
8FL7|1|L3|A|2395
8FL7|1|L3|A|2396
8FL7|1|L3|G|2397
8FL7|1|L3|U|2398
8FL7|1|L3|G|2399
*
8FL7|1|L3|C|2805
8FL7|1|L3|A|2806
8FL7|1|L3|A|2807
*
8FL7|1|L3|U|2819
8FL7|1|L3|C|2820
8FL7|1|L3|U|2821
8FL7|1|L3|G|2822

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L19

Chain LR

60S ribosomal protein L34

Chain SR

GTP-binding protein 4