3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
CUCG*CGAUAGUCAACAAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
8FL9|1|L1|C|23, 8FL9|1|L3|U|354, 8FL9|1|L3|A|362
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8FL9_015 not in the Motif Atlas
Geometric match to J3_5TBW_061
Geometric discrepancy: 0.0789
The information below is about J3_5TBW_061
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_24554.1
Basepair signature
cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
Number of instances in this motif group
7

Unit IDs

8FL9|1|L1|C|21
8FL9|1|L1|U|22
8FL9|1|L1|C|23
8FL9|1|L1|G|24
*
8FL9|1|L3|C|351
8FL9|1|L3|G|352
8FL9|1|L3|A|353
8FL9|1|L3|U|354
8FL9|1|L3|A|355
8FL9|1|L3|G|356
8FL9|1|L3|U|357
8FL9|1|L3|C|358
8FL9|1|L3|A|359
8FL9|1|L3|A|360
8FL9|1|L3|C|361
8FL9|1|L3|A|362
8FL9|1|L3|A|363
8FL9|1|L3|G|364
8FL9|1|L3|U|365
8FL9|1|L3|A|366
8FL9|1|L3|C|367
*
8FL9|1|L3|G|374
8FL9|1|L3|G|375
8FL9|1|L3|A|376
8FL9|1|L3|A|377
8FL9|1|L3|A|378
8FL9|1|L3|G|379

Current chains

Chain L1
5.8S rRNA
Chain L3
28S rRNA

Nearby chains

Chain LI
60S ribosomal protein L26
Chain LW
60S ribosomal protein L37
Chain LZ
60S ribosomal protein L39
Chain SA
60S ribosomal protein L4
Chain SR
GTP-binding protein 4

Coloring options:


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