J3_8FLA_008

3D structure

PDB id

8FLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State K1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FLA_008 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1266

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8FLA|1|L3|C|3937
8FLA|1|L3|G|3938
8FLA|1|L3|G|3939
*
8FLA|1|L3|C|4074
8FLA|1|L3|U|4075
8FLA|1|L3|G|4076
8FLA|1|L3|A|4077
8FLA|1|L3|C|4078
*
8FLA|1|L3|G|4168
8FLA|1|L3|G|4169
8FLA|1|L3|A|4170
8FLA|1|L3|C|4171
8FLA|1|L3|A|4172
8FLA|1|L3|G|4173

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L9

60S ribosomal protein L15

Chain SE

60S ribosomal protein L7a

Chain SF

60S ribosomal protein L8