J3_8FLB_008

3D structure

PDB id

8FLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State K2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FLB_008 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1215

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8FLB|1|L3|C|3937
8FLB|1|L3|G|3938
8FLB|1|L3|G|3939
*
8FLB|1|L3|C|4074
8FLB|1|L3|U|4075
8FLB|1|L3|G|4076
8FLB|1|L3|A|4077
8FLB|1|L3|C|4078
*
8FLB|1|L3|G|4168
8FLB|1|L3|G|4169
8FLB|1|L3|A|4170
8FLB|1|L3|C|4171
8FLB|1|L3|A|4172
8FLB|1|L3|G|4173

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L9

60S ribosomal protein L15

Chain SE

60S ribosomal protein L7a

Chain SF

60S ribosomal protein L8