J3_8FLC_008

3D structure

PDB id

8FLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State K3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FLC_008 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1351

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8FLC|1|L3|C|3937
8FLC|1|L3|G|3938
8FLC|1|L3|G|3939
*
8FLC|1|L3|C|4074
8FLC|1|L3|U|4075
8FLC|1|L3|G|4076
8FLC|1|L3|A|4077
8FLC|1|L3|C|4078
*
8FLC|1|L3|G|4168
8FLC|1|L3|G|4169
8FLC|1|L3|A|4170
8FLC|1|L3|C|4171
8FLC|1|L3|A|4172
8FLC|1|L3|G|4173

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L9

60S ribosomal protein L15

Chain SE

60S ribosomal protein L7a

Chain SF

60S ribosomal protein L8