J3_8FLD_004

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8FLD|1|L3|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FLD_004 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1001

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8FLD|1|L3|C|2393
8FLD|1|L3|G|2394
8FLD|1|L3|A|2395
8FLD|1|L3|A|2396
8FLD|1|L3|G|2397
8FLD|1|L3|U|2398
8FLD|1|L3|G|2399
*
8FLD|1|L3|C|2805
8FLD|1|L3|A|2806
8FLD|1|L3|A|2807
*
8FLD|1|L3|U|2819
8FLD|1|L3|C|2820
8FLD|1|L3|U|2821
8FLD|1|L3|G|2822

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L19

Chain LR

60S ribosomal protein L34

Chain SR

GTP-binding protein 4