J3_8FLD_007

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FLD_007 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1279

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8FLD|1|L3|C|3937
8FLD|1|L3|G|3938
8FLD|1|L3|G|3939
*
8FLD|1|L3|C|4074
8FLD|1|L3|U|4075
8FLD|1|L3|G|4076
8FLD|1|L3|A|4077
8FLD|1|L3|C|4078
*
8FLD|1|L3|G|4168
8FLD|1|L3|G|4169
8FLD|1|L3|A|4170
8FLD|1|L3|C|4171
8FLD|1|L3|A|4172
8FLD|1|L3|G|4173

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L9

60S ribosomal protein L15

Chain SE

60S ribosomal protein L7a

Chain SF

60S ribosomal protein L8