J3_8FLD_022
3D structure
- PDB id
- 8FLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State L1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- (OMG)UC*GCCUCACGAUCC*(OMG)GUGUC
- Length
- 21 nucleotides
- Bulged bases
- 8FLD|1|L3|C|4337, 8FLD|1|L3|U|4374
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FLD_022 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0732
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8FLD|1|L3|OMG|4228
8FLD|1|L3|U|4229
8FLD|1|L3|C|4230
*
8FLD|1|L3|G|4331
8FLD|1|L3|C|4332
8FLD|1|L3|C|4333
8FLD|1|L3|U|4334
8FLD|1|L3|C|4335
8FLD|1|L3|A|4336
8FLD|1|L3|C|4337
8FLD|1|L3|G|4338
8FLD|1|L3|A|4339
8FLD|1|L3|U|4340
8FLD|1|L3|C|4341
8FLD|1|L3|C|4342
*
8FLD|1|L3|OMG|4370
8FLD|1|L3|G|4371
8FLD|1|L3|U|4372
8FLD|1|L3|G|4373
8FLD|1|L3|U|4374
8FLD|1|L3|C|4375
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L18
- Chain LE
- 60S ribosomal protein L21
- Chain LK
- 60S ribosomal protein L27a
- Chain LV
- 60S ribosomal protein L36a
Coloring options: