J3_8FOM_012
3D structure
- PDB id
- 8FOM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 8FOM|1|QA|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FOM_012 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.2754
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.1
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8FOM|1|QA|C|1116
8FOM|1|QA|G|1117
8FOM|1|QA|C|1118
*
8FOM|1|QA|G|1155
8FOM|1|QA|G|1156
8FOM|1|QA|A|1157
8FOM|1|QA|C|1158
8FOM|1|QA|U|1159
8FOM|1|QA|G|1160
8FOM|1|QA|C|1161
*
8FOM|1|QA|G|1175
8FOM|1|QA|A|1176
8FOM|1|QA|G|1177
8FOM|1|QA|G|1178
8FOM|1|QA|A|1179
8FOM|1|QA|A|1180
8FOM|1|QA|G|1181
8FOM|1|QA|G|1182
8FOM|1|QA|A|1183
8FOM|1|QA|G|1184
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QB
- 30S ribosomal protein S2
- Chain QI
- 30S ribosomal protein S9
- Chain QJ
- 30S ribosomal protein S10
- Chain QN
- 30S ribosomal protein S14 type Z
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