J3_8FOM_025

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

8FOM|1|RA|A|2518, 8FOM|1|RA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FOM_025 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0775

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

8FOM|1|RA|C|2517
8FOM|1|RA|A|2518
8FOM|1|RA|U|2519
8FOM|1|RA|C|2520
*
8FOM|1|RA|G|2545
8FOM|1|RA|U|2546
8FOM|1|RA|U|2547
*
8FOM|1|RA|A|2561
8FOM|1|RA|U|2562
8FOM|1|RA|U|2563
8FOM|1|RA|A|2564
8FOM|1|RA|A|2565
8FOM|1|RA|A|2566
8FOM|1|RA|G|2567

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RO

50S ribosomal protein L14