J3_8FOM_041

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

8FOM|1|XA|U|1240, 8FOM|1|XA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FOM_041 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1736

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

8FOM|1|XA|C|1237
8FOM|1|XA|A|1238
8FOM|1|XA|A|1239
8FOM|1|XA|U|1240
8FOM|1|XA|G|1241
*
8FOM|1|XA|C|1296
8FOM|1|XA|C|1297
8FOM|1|XA|C|1298
8FOM|1|XA|A|1299
8FOM|1|XA|G|1300
8FOM|1|XA|U|1301
8FOM|1|XA|U|1302
8FOM|1|XA|C|1303
*
8FOM|1|XA|G|1334
8FOM|1|XA|C|1335
8FOM|1|XA|C|1336
8FOM|1|XA|G|1337

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XM

30S ribosomal protein S13

Chain XU

30S ribosomal protein Thx