J3_8FOM_075
3D structure
- PDB id
- 8FOM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 8FOM|1|YA|U|271|||C
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FOM_075 not in the Motif Atlas
- Homologous match to J3_9DFE_005
- Geometric discrepancy: 0.1711
- The information below is about J3_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97971.2
- Basepair signature
- cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8FOM|1|YA|U|269
8FOM|1|YA|A|270
8FOM|1|YA|A|270|||A
8FOM|1|YA|A|270|||B
8FOM|1|YA|C|270|||C
*
8FOM|1|YA|G|270|||W
8FOM|1|YA|G|270|||X
8FOM|1|YA|G|270|||Y
8FOM|1|YA|U|270|||Z
8FOM|1|YA|C|271|||A
8FOM|1|YA|G|271|||B
8FOM|1|YA|U|271|||C
8FOM|1|YA|G|271
*
8FOM|1|YA|C|366
8FOM|1|YA|G|370
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y1
- 50S ribosomal protein L28
- Chain YI
- 50S ribosomal protein L9
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