J3_8FON_011

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

8FON|1|QA|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FON_011 not in the Motif Atlas

Geometric match to J3_4LFB_018

Geometric discrepancy: 0.2938

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_40706.1

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FON|1|QA|C|1116
8FON|1|QA|G|1117
8FON|1|QA|C|1118
*
8FON|1|QA|G|1155
8FON|1|QA|G|1156
8FON|1|QA|A|1157
8FON|1|QA|C|1158
8FON|1|QA|U|1159
8FON|1|QA|G|1160
8FON|1|QA|C|1161
*
8FON|1|QA|G|1175
8FON|1|QA|A|1176
8FON|1|QA|G|1177
8FON|1|QA|G|1178
8FON|1|QA|A|1179
8FON|1|QA|A|1180
8FON|1|QA|G|1181
8FON|1|QA|G|1182
8FON|1|QA|A|1183
8FON|1|QA|G|1184

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QI

30S ribosomal protein S9

Chain QN

30S ribosomal protein S14 type Z