J3_8FON_012

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

8FON|1|QA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FON_012 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1988

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

8FON|1|QA|C|1237
8FON|1|QA|A|1238
8FON|1|QA|A|1239
8FON|1|QA|U|1240
8FON|1|QA|G|1241
*
8FON|1|QA|C|1296
8FON|1|QA|C|1297
8FON|1|QA|C|1298
8FON|1|QA|A|1299
8FON|1|QA|G|1300
8FON|1|QA|U|1301
8FON|1|QA|U|1302
8FON|1|QA|C|1303
*
8FON|1|QA|G|1334
8FON|1|QA|C|1335
8FON|1|QA|C|1336
8FON|1|QA|G|1337

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QM

30S ribosomal protein S13

Chain QU

30S ribosomal protein Thx