J3_8FON_021

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

8FON|1|RA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FON_021 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1164

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8FON|1|RA|G|1344
8FON|1|RA|C|1345
8FON|1|RA|G|1346
8FON|1|RA|G|1347
8FON|1|RA|G|1348
8FON|1|RA|A|1349
8FON|1|RA|C|1350
*
8FON|1|RA|G|1381
8FON|1|RA|G|1382
8FON|1|RA|C|1383
8FON|1|RA|A|1384
8FON|1|RA|G|1385
*
8FON|1|RA|C|1402
8FON|1|RA|C|1403

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RX

50S ribosomal protein L23