J3_8FON_046

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FON_046 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.1032

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8FON|1|YA|C|1298
8FON|1|YA|G|1299
8FON|1|YA|U|1300
8FON|1|YA|A|1301
8FON|1|YA|A|1302
8FON|1|YA|G|1303
*
8FON|1|YA|C|1625
8FON|1|YA|G|1626
8FON|1|YA|G|1627
*
8FON|1|YA|U|1639
8FON|1|YA|C|1640
8FON|1|YA|A|1641
8FON|1|YA|G|1642

Current chains

Chain YA

23S rRNA

Nearby chains