J3_8FON_064

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

8FON|1|RA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FON_064 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0925

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8FON|1|RA|C|297
8FON|1|RA|G|298
8FON|1|RA|A|299
8FON|1|RA|A|300
8FON|1|RA|G|301
*
8FON|1|RA|C|316
8FON|1|RA|G|317
8FON|1|RA|C|318
8FON|1|RA|C|319
8FON|1|RA|A|320
8FON|1|RA|G|321
8FON|1|RA|A|322
8FON|1|RA|G|323
8FON|1|RA|A|324
8FON|1|RA|G|325
*
8FON|1|RA|C|337
8FON|1|RA|G|338
8FON|1|RA|U|339
8FON|1|RA|A|340
8FON|1|RA|G|341

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24