J3_8FON_070

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FON_070 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.1538

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8FON|1|XA|C|936
8FON|1|XA|A|937
8FON|1|XA|A|938
8FON|1|XA|G|939
*
8FON|1|XA|C|1344
8FON|1|XA|U|1345
8FON|1|XA|A|1346
8FON|1|XA|G|1347
8FON|1|XA|U|1348
8FON|1|XA|A|1349
8FON|1|XA|A|1350
*
8FON|1|XA|U|1372
8FON|1|XA|G|1373
8FON|1|XA|A|1374
8FON|1|XA|A|1375
8FON|1|XA|U|1376
8FON|1|XA|A|1377
8FON|1|XA|C|1378
8FON|1|XA|G|1379

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XI

30S ribosomal protein S9