J3_8FR8_008
3D structure
- PDB id
- 8FR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- UUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FR8_008 not in the Motif Atlas
- Homologous match to J3_7RQB_010
- Geometric discrepancy: 0.0978
- The information below is about J3_7RQB_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.3
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
8FR8|1|A|U|2314
8FR8|1|A|U|2315
8FR8|1|A|G|2316
*
8FR8|1|A|C|2419
8FR8|1|A|U|2420
8FR8|1|A|A|2421
8FR8|1|A|A|2422
8FR8|1|A|C|2423
*
8FR8|1|A|G|2447
8FR8|1|A|G|2448
8FR8|1|A|A|2449
8FR8|1|A|C|2450
8FR8|1|A|A|2451
8FR8|1|A|G|2452
Current chains
- Chain A
- 23S rRNA (3119-MER)
Nearby chains
- Chain K
- 50S ribosomal protein L2
- Chain Q
- 50S ribosomal protein L9
- Chain y
- 50S ribosomal protein L28
Coloring options: