J3_8FR8_021

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FR8_021 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.0795

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8FR8|1|A|G|27
8FR8|1|A|C|28
*
8FR8|1|A|G|562
8FR8|1|A|U|563
8FR8|1|A|G|564
8FR8|1|A|A|565
8FR8|1|A|A|566
8FR8|1|A|A|567
8FR8|1|A|A|568
8FR8|1|A|G|569
*
8FR8|1|A|C|596
8FR8|1|A|C|597

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain 1

50S ribosomal protein L24

Chain W

50S ribosomal protein L20

Chain Y

50S ribosomal protein L22