J3_8FR8_024
3D structure
- PDB id
- 8FR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- AC*GAUAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 8FR8|1|A|U|69, 8FR8|1|A|A|71
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FR8_024 not in the Motif Atlas
- Homologous match to J3_9DFE_004
- Geometric discrepancy: 0.08
- The information below is about J3_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
8FR8|1|A|A|53
8FR8|1|A|C|54
*
8FR8|1|A|G|67
8FR8|1|A|A|68
8FR8|1|A|U|69
8FR8|1|A|A|70
8FR8|1|A|A|71
8FR8|1|A|G|72
8FR8|1|A|C|73
*
8FR8|1|A|G|107
8FR8|1|A|A|108
8FR8|1|A|U|109
8FR8|1|A|G|110
8FR8|1|A|U|111
Current chains
- Chain A
- 23S rRNA (3119-MER)
Nearby chains
- Chain 0
- 50S ribosomal protein L34
- Chain 6
- 50S ribosomal protein L29
- Chain Z
- 50S ribosomal protein L23
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