J3_8FR8_026

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GGAAA*UGCCGUAGAC*GGUAC

Length

20 nucleotides

Bulged bases

8FR8|1|A|U|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FR8_026 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.1242

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8FR8|1|A|G|378
8FR8|1|A|G|379
8FR8|1|A|A|380
8FR8|1|A|A|381
8FR8|1|A|A|382
*
8FR8|1|A|U|398
8FR8|1|A|G|399
8FR8|1|A|C|400
8FR8|1|A|C|401
8FR8|1|A|G|402
8FR8|1|A|U|403
8FR8|1|A|A|404
8FR8|1|A|G|405
8FR8|1|A|A|406
8FR8|1|A|C|407
*
8FR8|1|A|G|419
8FR8|1|A|G|420
8FR8|1|A|U|421
8FR8|1|A|A|422
8FR8|1|A|C|423

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain 1

50S ribosomal protein L24

Chain M

50S ribosomal protein L4