J3_8FRU_009

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UACC*GUC*GUUCAA

Length

13 nucleotides

Bulged bases

8FRU|1|1|A|2308, 8FRU|1|1|C|2309, 8FRU|1|1|U|2353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FRU|1|1|U|2307
8FRU|1|1|A|2308
8FRU|1|1|C|2309
8FRU|1|1|C|2310
*
8FRU|1|1|G|2335
8FRU|1|1|U|2336
8FRU|1|1|C|2337
*
8FRU|1|1|G|2351
8FRU|1|1|U|2352
8FRU|1|1|U|2353
8FRU|1|1|C|2354
8FRU|1|1|A|2355
8FRU|1|1|A|2356

Current chains

Chain 1

28S rRNA

Nearby chains

Chain B

60S ribosomal protein uL3

Chain V

60S ribosomal protein uL14