J3_8FRU_010

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCAUCC*GGC*GUG

Length

12 nucleotides

Bulged bases

8FRU|1|3|U|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FRU|1|3|C|8
8FRU|1|3|C|9
8FRU|1|3|A|10
8FRU|1|3|U|11
8FRU|1|3|C|12
8FRU|1|3|C|13
*
8FRU|1|3|G|65
8FRU|1|3|G|66
8FRU|1|3|C|67
*
8FRU|1|3|G|108
8FRU|1|3|U|109
8FRU|1|3|G|110

Current chains

Chain 3

5S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain D

60S ribosomal protein uL18

Chain I

60S ribosomal protein uL16

Chain J

60S ribosomal protein uL5

Chain T

60S ribosomal protein eL21