J3_8FRU_014
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GUGAAAAG*CC*GC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FRU_014 not in the Motif Atlas
- Geometric match to J3_4WF9_010
- Geometric discrepancy: 0.1186
- The information below is about J3_4WF9_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 11
Unit IDs
8FRU|1|1|G|319
8FRU|1|1|U|320
8FRU|1|1|G|321
8FRU|1|1|A|322
8FRU|1|1|A|323
8FRU|1|1|A|324
8FRU|1|1|A|325
8FRU|1|1|G|326
*
8FRU|1|1|C|351
8FRU|1|1|C|352
*
8FRU|1|4|G|19
8FRU|1|4|C|20
Current chains
- Chain 1
- 28S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein uL4
- Chain P
- 60S ribosomal protein uL22
- Chain Y
- 60S ribosomal protein uL24
- Chain l
- 60S ribosomal protein eL39
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