J3_8FRU_019

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GC*GCGAAC*GGACCC

Length

14 nucleotides

Bulged bases

8FRU|1|1|C|1413, 8FRU|1|1|C|1414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FRU|1|1|G|1338
8FRU|1|1|C|1339
*
8FRU|1|1|G|1357
8FRU|1|1|C|1358
8FRU|1|1|G|1359
8FRU|1|1|A|1360
8FRU|1|1|A|1361
8FRU|1|1|C|1362
*
8FRU|1|1|G|1410
8FRU|1|1|G|1411
8FRU|1|1|A|1412
8FRU|1|1|C|1413
8FRU|1|1|C|1414
8FRU|1|1|C|1415

Current chains

Chain 1

28S rRNA

Nearby chains

Chain U

60S ribosomal protein eL22

Chain g

60S ribosomal protein eL34

Chain k

60S ribosomal protein eL38