J3_8FRU_020
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GUC*GCCUACCGAUCC*GGUGGC
- Length
- 21 nucleotides
- Bulged bases
- 8FRU|1|1|C|2182, 8FRU|1|1|G|2218
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FRU_020 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.1341
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8FRU|1|1|G|2073
8FRU|1|1|U|2074
8FRU|1|1|C|2075
*
8FRU|1|1|G|2176
8FRU|1|1|C|2177
8FRU|1|1|C|2178
8FRU|1|1|U|2179
8FRU|1|1|A|2180
8FRU|1|1|C|2181
8FRU|1|1|C|2182
8FRU|1|1|G|2183
8FRU|1|1|A|2184
8FRU|1|1|U|2185
8FRU|1|1|C|2186
8FRU|1|1|C|2187
*
8FRU|1|1|G|2214
8FRU|1|1|G|2215
8FRU|1|1|U|2216
8FRU|1|1|G|2217
8FRU|1|1|G|2218
8FRU|1|1|C|2219
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain Q
- 60S ribosomal protein eL18
- Chain T
- 60S ribosomal protein eL21
- Chain a
- 60S ribosomal protein uL15
- Chain o
- 60S ribosomal protein eL42
Coloring options: