J3_8FRU_022
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CCAUCC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 8FRU|1|3|U|11
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FRU_022 not in the Motif Atlas
- Homologous match to J3_8C3A_059
- Geometric discrepancy: 0.1579
- The information below is about J3_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8FRU|1|3|C|8
8FRU|1|3|C|9
8FRU|1|3|A|10
8FRU|1|3|U|11
8FRU|1|3|C|12
8FRU|1|3|C|13
*
8FRU|1|3|G|65
8FRU|1|3|G|66
*
8FRU|1|3|U|109
8FRU|1|3|G|110
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein uL18
- Chain I
- 60S ribosomal protein uL16
- Chain J
- 60S ribosomal protein uL5
- Chain T
- 60S ribosomal protein eL21
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