3D structure

PDB id
8FTO (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with an improved MS2 tag inserted in H98
Experimental method
ELECTRON MICROSCOPY
Resolution
1.85 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
8FTO|1|A|A|975, 8FTO|1|A|G|976, 8FTO|1|A|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8FTO_004 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.0618
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8FTO|1|A|U|955
8FTO|1|A|U|956
8FTO|1|A|U|957
8FTO|1|A|A|958
8FTO|1|A|A|959
8FTO|1|A|U|960
8FTO|1|A|U|961
8FTO|1|A|C|962
*
8FTO|1|A|G|973
8FTO|1|A|A|974
8FTO|1|A|A|975
8FTO|1|A|G|976
8FTO|1|A|A|977
8FTO|1|A|A|978
8FTO|1|A|C|979
8FTO|1|A|C|980
8FTO|1|A|U|981
8FTO|1|A|U|982
8FTO|1|A|A|983
8FTO|1|A|C|984
*
8FTO|1|A|G|1221
8FTO|1|A|G|1222
8FTO|1|A|C|1223
8FTO|1|A|U|1224
8FTO|1|A|A|1225

Current chains

Chain A
16S rRNA

Nearby chains

Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain M
30S ribosomal protein S13
Chain N
30S ribosomal protein S14
Chain S
30S ribosomal protein S19

Coloring options:


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