3D structure

PDB id
8FTO (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with an improved MS2 tag inserted in H98
Experimental method
ELECTRON MICROSCOPY
Resolution
1.85 Å

Loop

Sequence
UGAUCUA*UGG*CAAA
Length
14 nucleotides
Bulged bases
8FTO|1|a|U|686, 8FTO|1|a|A|792
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8FTO_010 not in the Motif Atlas
Homologous match to J3_7RQB_004
Geometric discrepancy: 0.3124
The information below is about J3_7RQB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.4
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

8FTO|1|a|U|683
8FTO|1|a|G|684
8FTO|1|a|A|685
8FTO|1|a|U|686
8FTO|1|a|C|687
8FTO|1|a|U|688
8FTO|1|a|A|689
*
8FTO|1|a|U|773
8FTO|1|a|G|774
8FTO|1|a|G|775
*
8FTO|1|a|C|791
8FTO|1|a|A|792
8FTO|1|a|A|793
8FTO|1|a|A|794

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain c
50S ribosomal protein L2

Coloring options:


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