J3_8FTO_017
3D structure
- PDB id
- 8FTO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with an improved MS2 tag inserted in H98
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.85 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 8FTO|1|a|U|2866, 8FTO|1|a|A|2868
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FTO_017 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.12
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8FTO|1|a|G|2845
8FTO|1|a|A|2846
8FTO|1|a|A|2847
8FTO|1|a|C|2848
*
8FTO|1|a|G|2864
8FTO|1|a|U|2865
8FTO|1|a|U|2866
8FTO|1|a|G|2867
8FTO|1|a|A|2868
8FTO|1|a|U|2869
*
8FTO|1|a|A|2915
8FTO|1|a|A|2916
8FTO|1|a|U|2917
8FTO|1|a|G|2918
8FTO|1|a|A|2919
8FTO|1|a|A|2920
8FTO|1|a|C|2921
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain m
- 50S ribosomal protein L17
- Chain r
- 50S ribosomal protein L22
- Chain z
- 50S ribosomal protein L32
Coloring options: