3D structure

PDB id
8FZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8FZD_006 not in the Motif Atlas
Homologous match to J3_5J7L_044
Geometric discrepancy: 0.0676
The information below is about J3_5J7L_044
Detailed Annotation
Kink-turn in J3
Broad Annotation
No text annotation
Motif group
J3_89368.5
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

8FZD|1|A|C|2091
8FZD|1|A|U|2092
8FZD|1|A|G|2093
*
8FZD|1|A|C|2196
8FZD|1|A|U|2197
8FZD|1|A|A|2198
8FZD|1|A|A|2199
8FZD|1|A|C|2200
*
8FZD|1|A|G|2223
8FZD|1|A|G|2224
8FZD|1|A|A|2225
8FZD|1|A|C|2226
8FZD|1|A|A|2227
8FZD|1|A|G|2228

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain H
50S ribosomal protein L9
Chain Z
50S ribosomal protein L28

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1418 s