J3_8FZD_020

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FZD_020 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.1058

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8FZD|1|A|G|30
8FZD|1|A|C|31
*
8FZD|1|A|G|474
8FZD|1|A|C|475
8FZD|1|A|G|476
8FZD|1|A|A|477
8FZD|1|A|A|478
8FZD|1|A|A|479
8FZD|1|A|A|480
8FZD|1|A|G|481
*
8FZD|1|A|C|509
8FZD|1|A|C|510

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L20

Chain W

50S ribosomal protein L24