3D structure

PDB id
8FZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
8FZD|1|A|U|34, 8FZD|1|A|U|448, 8FZD|1|A|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8FZD_022 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.079
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

8FZD|1|A|C|32
8FZD|1|A|C|33
8FZD|1|A|U|34
8FZD|1|A|G|35
*
8FZD|1|A|C|445
8FZD|1|A|G|446
8FZD|1|A|A|447
8FZD|1|A|U|448
8FZD|1|A|A|449
8FZD|1|A|G|450
8FZD|1|A|U|451
8FZD|1|A|G|452
8FZD|1|A|A|453
8FZD|1|A|A|454
8FZD|1|A|C|455
8FZD|1|A|C|456
8FZD|1|A|A|457
8FZD|1|A|G|458
8FZD|1|A|U|459
8FZD|1|A|A|460
8FZD|1|A|C|461
*
8FZD|1|A|G|468
8FZD|1|A|G|469
8FZD|1|A|A|470
8FZD|1|A|A|471
8FZD|1|A|A|472
8FZD|1|A|G|473

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 6
50S ribosomal protein L34
Chain E
50S ribosomal protein L4
Chain S
50S ribosomal protein L20
Chain V
50S ribosomal protein L23

Coloring options:


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