J3_8FZD_026

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FZD_026 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1119

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8FZD|1|A|G|1424
8FZD|1|A|G|1425
8FZD|1|A|G|1426
8FZD|1|A|A|1427
8FZD|1|A|C|1428
8FZD|1|A|G|1429
*
8FZD|1|A|C|1564
8FZD|1|A|C|1565
*
8FZD|1|A|G|1568
8FZD|1|A|A|1569
8FZD|1|A|A|1570
8FZD|1|A|A|1571
8FZD|1|A|A|1572
8FZD|1|A|G|1573
8FZD|1|A|C|1574

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2