3D structure

PDB id
8FZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGG*CUUGA*UGACG
Length
13 nucleotides
Bulged bases
8FZD|1|a|U|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8FZD_034 not in the Motif Atlas
Homologous match to J3_4LFB_015
Geometric discrepancy: 0.105
The information below is about J3_4LFB_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8FZD|1|a|C|586
8FZD|1|a|G|587
8FZD|1|a|G|588
*
8FZD|1|a|C|651
8FZD|1|a|U|652
8FZD|1|a|U|653
8FZD|1|a|G|654
8FZD|1|a|A|655
*
8FZD|1|a|U|751
8FZD|1|a|G|752
8FZD|1|a|A|753
8FZD|1|a|C|754
8FZD|1|a|G|755

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain h
30S ribosomal protein S8
Chain l
30S ribosomal protein S12
Chain o
30S ribosomal protein S15
Chain q
30S ribosomal protein S17

Coloring options:


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