J3_8FZF_013

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCUA

Length

25 nucleotides

Bulged bases

8FZF|1|a|A|975, 8FZF|1|a|G|976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FZF_013 not in the Motif Atlas

Homologous match to J3_5J7L_006

Geometric discrepancy: 0.1755

The information below is about J3_5J7L_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8FZF|1|a|U|955
8FZF|1|a|U|956
8FZF|1|a|U|957
8FZF|1|a|A|958
8FZF|1|a|A|959
8FZF|1|a|U|960
8FZF|1|a|U|961
8FZF|1|a|C|962
*
8FZF|1|a|G|973
8FZF|1|a|A|974
8FZF|1|a|A|975
8FZF|1|a|G|976
8FZF|1|a|A|977
8FZF|1|a|A|978
8FZF|1|a|C|979
8FZF|1|a|C|980
8FZF|1|a|U|981
8FZF|1|a|U|982
8FZF|1|a|A|983
8FZF|1|a|C|984
*
8FZF|1|a|G|1221
8FZF|1|a|G|1222
8FZF|1|a|C|1223
8FZF|1|a|U|1224
8FZF|1|a|A|1225

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain j

30S ribosomal protein S10

Chain m

30S ribosomal protein S13

Chain n

Small ribosomal subunit protein uS14

Chain s

30S ribosomal protein S19